Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015889037.1_cds_XP_016443694.1_38830
CDS Infomation

[gene=LOC107769032] [db_xref=GeneID:107769032] [protein=pentatricopeptide repeat-containing protein At5g15300-like] [protein_id=XP_016443694.1] [location=58113..59729] [gbkey=CDS]
Sequence

ATGATCAAAAAGACAATAACAAGCAGGAGTTCAAATCTTCACAGGCAATCATCACTATGG
AGCAAATGCAAAGATCTCCAATACCTAAAGCAAATCCACGCTTTGATGATCATCAGTGGT
TTCAACTCCAATCGCTTTGCTCTCAGGGAGCTCATTTATGCTTCTTCCGTTACCTTTTCA
GCATCTATTCACTATGCCCACAAACTGTTTGCTCAAATTACTCAACCAGACCTCTTCATG
TGGAACACCATGCTCAGAGGCTCAGCTCAGAGTCTCAGGCCTTCACTTGCCCTTTCCCTT
TATGCCCAGATGGAAAAACGTTACATACGTCCCGATAGTTATACTTTTCCGTTTGTACTC
AAGGCATGTACCAAGCTTTCTTGGCTTGTTTCTGGCCTTACCATTCATGGGAAAATTGTG
AAACATGGATTTGAATCTAATAAATTTGCGAGGAATACCCTCATATATTTTCACGCTAAT
GTTGGAGATATAAGAATTGCAGGGCAACTTTTTGATGGTTCTGCTAAAAGGGATGTTGTT
GCTTGGTCTGCTTTGACTGCTGGTTATGCGAGGAGAGGTGAATTAGATGTGGCATGGAGG
CTGTTTGATGATATGCCGGTTAAAGACTTGGTTTCCTGGAATGTGATGATCACGGGGTAT
GTGAAGCAAGGGAAAATGGAAAATGCAAGGGAGTTGTTTAATATGGTGCCAAAGCGGGAT
GTTGTAACTTGGAATGCGATGCTTTCTGGATATCTTATTTGTGGAGAAAATGAGAACGCG
TTAAAAATGTATGCAGAGATGAGAAGTGCAGGGGAACACCCTGACAAGGTTACCATGTTA
CACCTGTTATCCGCTTGCACGGATTCAGCATTCTTGGATGTTGGCGAGCAGATACATCAA
TCTATTATCGAGATGGGTGCAGGCGAGTTAAGTATATTTCTTGGTAATGCACTTGTAGAC
ATGTATGCTAGGTGTGGCAGCATCAGCAAAGCACTTGAAGTTTTTCAAGGCATGAGAGAA
AAGGATGTATCGTCTTGGAACATAATTATTCTAGGATTAGCTTTCCATGGTCATTCTGAA
GAATGTATTTCTCTTTTTGAAGATATGAGGAGAATGAAGTATATTCCTAATGAAATTACT
TTTGTGGGGGTATTAGTTGCTTGTAGTCATGCAGGAAAAGTTGATGAGGGCAGAGGATAT
TTCAACATGATGAGAGCTGAGTACAATATTGAGCCGAACATAAGGCACTATGGGTGTATG
GTGGATGTGCTAGCACGTGCAGGACTACTGCATGAAGCGTTTGATTTCATTAACACGATG
GAGATTGAACCTAATGCTATTATATGGAGAACTCTGCTAGGAGCTTGTAAAGTTCATTCC
AATGTCGAGCTGGGAAGGTATGCTAATGAGCAACTGCTTAAATTGGGAAGGGAAGACAGT
GGTGATTATGTCTTGCTGTCAAACATCTATGCTTCAAGAGATGAATGGGATGGTGTTGAA
AGGGTGAGGAAGTTGATGGATGATAATGGGGTTTGGAAAGAACCTGGTTGTACTCTAATC
GAGGCTGATGACACTCTCAAGAATTTTTTGTTTGATTCAAAGCTTATGCACTCTTAG

Peptide Sequence

PEP ID

XP_016443694.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At5g15300-like [Nicotiana tabacum]
Sequence

MIKKTITSRSSNLHRQSSLWSKCKDLQYLKQIHALMIISGFNSNRFALRELIYASSVTFS
ASIHYAHKLFAQITQPDLFMWNTMLRGSAQSLRPSLALSLYAQMEKRYIRPDSYTFPFVL
KACTKLSWLVSGLTIHGKIVKHGFESNKFARNTLIYFHANVGDIRIAGQLFDGSAKRDVV
AWSALTAGYARRGELDVAWRLFDDMPVKDLVSWNVMITGYVKQGKMENARELFNMVPKRD
VVTWNAMLSGYLICGENENALKMYAEMRSAGEHPDKVTMLHLLSACTDSAFLDVGEQIHQ
SIIEMGAGELSIFLGNALVDMYARCGSISKALEVFQGMREKDVSSWNIIILGLAFHGHSE
ECISLFEDMRRMKYIPNEITFVGVLVACSHAGKVDEGRGYFNMMRAEYNIEPNIRHYGCM
VDVLARAGLLHEAFDFINTMEIEPNAIIWRTLLGACKVHSNVELGRYANEQLLKLGREDS
GDYVLLSNIYASRDEWDGVERVRKLMDDNGVWKEPGCTLIEADDTLKNFLFDSKLMHS

Transcript Sequence

Gene sequence data has not been registered.